Export to StochKit (pysb.export.stochkit
)¶
Module containing a class to return the StochKit XML equivalent of a model
Contains code based on the gillespy <https://github.com/JohnAbel/gillespy> library with permission from author Brian Drawert.
For information on how to use the model exporters, see the documentation
for pysb.export
.
-
class
pysb.export.stochkit.
StochKitExporter
(model, docstring=None)[source]¶ A class for returning the Kappa for a given PySB model.
Inherits from
pysb.export.Exporter
, which implements basic functionality for all exporters.-
export
(initials=None, param_values=None)[source]¶ Generate the corresponding StochKit2 XML for a PySB model
Parameters: - initials : list of numbers
List of initial species concentrations overrides (must be same length as model.species). If None, the concentrations from the model are used.
- param_values : list
List of parameter value overrides (must be same length as model.parameters). If None, the parameter values from the model are used.
Returns: - string
The model in StochKit2 XML format
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